Astronomy | |||
Practical Applications of Astropy [More Info] Speaker: David Shupe, Caltech/IPAC | |||
Biology and Bioinformatics | |||
Should this Drug be Approved? A Bayesian’s Answer with Stan [More Info] Speaker: Marianne Corvellec, Data Scientist, Institute for Globally Distributed Open Research and Education (IGDORE) Speaker: Konstantinos Vamvourellis, London School of Economics and Political Science | |||
Resurrecting Ancient Proteins in Python [More Info] Speaker: Zachary Sailer, University of Oregon Speaker: Jeremy Anderson, University of Oregon | |||
Birds of a Feather (BoFs) | |||
How to Give a Lightning Talk BoF | |||
Pangeo: Scaling Earth Science Analysis BoF [More Info] | |||
The Future of Data Visualization in Python BoF | |||
Dashboards and Web Apps BoF [More Info] | |||
Data and Computing Education [More Info] Speaker: Tracy Teal, Data Carpentry Speaker: Hugo Bowne-Anderson, DataCamp | |||
So what's up with NumPy BoF | |||
Dask Applications BoF [More Info] | |||
Matplotlib Townhall Session BoF | |||
Pandas BoF | |||
SciPy 2019 BoF [More Info] | |||
Diversity in Open Source BoF | |||
PyOpenSci: A Community for Reproducible Research and Scientific Code Reviews BoF [More Info] | |||
Python in Biology BoF | |||
Data Science | |||
Recipe2Vec: How word2vec Helped us Discover Related Tasty Recipes [More Info] Speaker: Meghan Heintz, BuzzFeed | |||
scikit-learn and Tabular Data: Closing the Gap [More Info] Speaker: Joris Van den Bossche, Université Paris-Saclay Center for Data Science | |||
Safe Handling Instructions for Missing Data [More Info] Speaker: Dillon Niederhut, Enthought | |||
Performing Dimension Reduction at Scale with Applications to Public Sentiment Models [More Info] Speaker: Walt Askew, Civis Analytics | |||
Devops Empowered Data Science with Ansible [More Info] Speaker: Tim Hopper, Cylance Inc. | |||
Cloudknot: A Python Library to Run your Existing Code on AWS Batch [More Info] Speaker: Adam Richie-Halford, University of Washington Speaker: Ariel Rokem, The University of Washington eScience Institute | |||
PyDASL: Understanding Big Data Through GPU Accelerated Graph Analytics [More Info] Speaker: Anne Struble, Systap Speaker: Brad Bebee, Systap | |||
Data Visualization | |||
Bringing ipywidgets Support to plotly.py [More Info] Speaker: Jon Mease, Johns Hopkins Applied Physics Laboratory | |||
bqplot: Seamless Interactive Visualizations and Dashboards in the Jupyter Notebook [More Info] Speaker: Sylvain Corlay, QuantStack | |||
Data Visualization for Scientific Discovery [More Info] Speaker: Zan Armstrong, Google | |||
Interactive 3d Visualization in Jupyter [More Info] Speaker: Maarten Breddels, Kapteyn Astronomical Institute, University of Groningen | |||
Interactive Data Visualization Leveraging Jupyter, Rust and WebAssembly [More Info] Speaker: Madicken Munk, University of Illinois at Urbana-Champaign Speaker: Nathanael Claussen, University of Illinois at Urbana-Champaign | |||
PyViz: Unifying Python Tools for In-Browser Data Visualization [More Info] Speaker: James A. Bednar, Solutions Architect, Anaconda, Inc. Speaker: Jean-Luc Stevens, Software Engineer, Anaconda, Inc. Speaker: Philipp Rudiger, Software Engineer, Anaconda, Inc. Speaker: Christopher Ball, Anaconda, Inc. Speaker: Bryan Van de Ven, Anaconda, Inc. | |||
Earth, Ocean and Geo Science | |||
SatPy: A Python Library for Weather Satellite Processing [More Info] Speaker: David Hoese, University of Wisconsin - Madison, Space Science and Engineering Center Speaker: Martin Raspaud, Swedish Meteorological and Hydrological Institute | |||
Website for Interacting with Oceanographic Data and Numerical Model Output [More Info] Speaker: Kristen Thyng, Assistant Research Scientist, Texas A&M University Speaker: Martinho Marta-Almeida | |||
Building your own Weather App using NOAA Open Data and Jupyter Notebooks [More Info] Speaker: Filipe Fernandes, SECOORA Speaker: Richard Signell, United State Geological Survey | |||
Harnessing the Power of Scientific Python to Investigate the Biogeochemistry of the Central Pacific Ocean [More Info] Speaker: Noelle Held, Woods Hole Oceanographic Institution/Massachusetts Institute of Technology Speaker: Jaclyn Saunders, Woods Hole Oceanographic Institution Speaker: Joe Futrelle, Woods Hole Oceanographic Institution Speaker: Mak Saito, Woods Hole Oceanographic Institution | |||
GeoBIPy - Geophysical Bayesian Inference in Python [More Info] Speaker: Leon Foks, Apogee Engineering contracted to United State Geological Survey Speaker: Burke Minsley, United States Geological Survey | |||
Building an Object-Oriented Python Interface for the Generic Mapping Tools [More Info] Speaker: Leonardo Uieda, Department of Geology and Geophysics, University of Hawaii at Manoa Speaker: Paul Wessel, Department of Geology and Geophysics, University of Hawaii at Manoa | |||
Pangeo: A Big-data Ecosystem for Scalable Earth System Science [More Info] Speaker: Joseph Hamman, Research Applications Laboratory, National Center for Atmospheric Research | |||
EarthSim: Flexible Environmental Simulation Workflows Entirely Within Jupyter Notebooks [More Info] Speaker: Dharhas Pothina, U.S. Army Engineer Research and Development Center Speaker: James A. Bednar, Solutions Architect, Anaconda, Inc. Speaker: Scott Christensen, U.S. Army Engineer Research and Development Center Speaker: Kevin Winters, U.S. Army Engineer Research and Development Center Speaker: Christopher Ball, Anaconda, Inc. Speaker: Gregory Brener, Anaconda Inc. Speaker: Philipp Rudiger, Software Engineer, Anaconda, Inc. | |||
Development of MetPy’s Declarative Plotting Interface [More Info] Speaker: Ryan May, UCAR/Unidata Speaker: John Leeman, UCAR/Unidata | |||
General | |||
Scikit-build: A Build System Generator for CPython C/C++/Fortran/Cython Extensions [More Info] Speaker: Jean-Christophe Fillion-Robin, Kitware, Inc. Speaker: Matthew McCormick, Kitware, Inc. Speaker: Omar Padron, Kitware, Inc. Speaker: Max Smolens, Kitware, Inc. Speaker: Michael Grauer, Kitware, Inc. Speaker: Michael Sarahan, Anaconda, Inc. | |||
Convex Optimization in Python with CVXPY [More Info] Speaker: Steven Diamond, Stanford University | |||
Inside the Cheeseshop: How Python Packaging Works [More Info] Speaker: Dustin Ingram, Python Packaging Authority | |||
Addressing Multithreading and Multiprocessing in Transparent and Pythonic Methods [More Info] Speaker: David Liu, Intel Speaker: Anton Malakhov, Intel Corporation | |||
Sparse - A More Modern Sparse Array Library [More Info] Speaker: Hameer Abbasi, TU Darmstadt | |||
pyQuil: Easy, Hybrid Quantum Programming [More Info] Speaker: Guenevere Prawiroatmodjo, Rigetti Quantum Computing | |||
Parsl: Enabling Scalable Interactive Computing in Python [More Info] Speaker: Kyle Chard, Computation Institute, University of Chicago and Argonne National Lab Speaker: Yadu Babuji, University of Chicago Speaker: Ian Foster, University of Chicago and Argonne National Laboratory Speaker: Daniel Katz, University of Illinois at Urbana-Champaign Speaker: Mike Wilde, University of Chicago Speaker: Anna Woodard, University of Chicago Speaker: Justin Wozniak, Argonne National Laboratory | |||
Using Python to Assess Serial Holdings Data in the Research Library [More Info] Speaker: Kelly Thompson, University of Minnesota | |||
SimuPy: A Python Framework for Modeling and Simulating Dynamical Systems [More Info] Speaker: Benjamin Margolis, University of California, Davis | |||
Resonance: Learning Mechanical Vibrations Through Computational Thinking [More Info] Speaker: Kenneth Lyons, University of California, Davis | |||
Engineers Code: Re-usable, Open Educational Modules for Engineering Undergraduates [More Info] Speaker: Lorena Barba, George Washington University | |||
Yaksh: Facilitating Learning by Doing [More Info] Speaker: Prabhu Ramachandran, Enthought and IIT Bombay Speaker: Prathamesh Salunke, FOSSEE, IIT Bombay Speaker: Ankit Javalkar, FOSSEE, IIT Bombay Speaker: Aditya Palaparthy, FOSSEE, IIT Bombay Speaker: Mahesh Gudi, FOSSEE, IIT Bombay Speaker: Hardik Ghaghada, Ex FOSSEE, IIT Bombay | |||
Image Processing | |||
ITK: The Insight Segmentation and Registration Toolkit [More Info] Speaker: Matthew McCormick, Kitware, Inc. Speaker: Francois Budin, Kitware, Inc. Speaker: Dženan Zukić, Kitware, Inc. Speaker: Deepak Chittajallu, Kitware, Inc. Speaker: Beatriz Paniagua, Kitware, Inc. Speaker: Jean-Christophe Fillion-Robin, Kitware, Inc. | |||
KEYNOTE | |||
Keynote: SciPy 1.0 and Beyond - a Story of Code and Community [More Info] Speaker: Ralf Gommers, FP Innovations, Scion | |||
Democratizing Data [More Info] Tracy Teal, Data Carpentry | |||
Keynote: Black and Gold: The Role of Python in Recent Gravitational Wave Astronomy Breakthroughs with LIGO and Virgo [More Info] Speaker: Leo Singer, LIGO | |||
Language Interoperability | |||
Apache Arrow: A Cross-language Development Platform for In-memory Data [More Info] Speaker: Wes McKinney, Two Sigma, pandas, Apache Software Foundation | |||
cis_interface: A Python Package for Connecting Scientific Models across Scales and Languages [More Info] Speaker: Meagan Lang, University of Illinois, Champaign-Urbana | |||
Machine Learning | |||
Physics: A Gateway to Bayesian Deep Learning [More Info] Speaker: Henri Palacci, Columbia University | |||
UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction [More Info] Speaker: Leland McInnes, Tutte Institute for Mathematics and Computing | |||
KubeFlow: Pythonic Machine Learning at Scale on Kubernetes [More Info] Speaker: Paige Bailey, Microsoft Speaker: David Aronchick, Google | |||
The Past, Present, and Future of Automated Machine Learning [More Info] Speaker: Randal Olson, Lead Data Scientist, Life Epigenetics, Inc. | |||
Detecting Anomalies Using Statistical Distances [More Info] Speaker: Charles Masson, Datadog | |||
Scalable Machine Learning with Dask [More Info] Speaker: Tom Augspurger, Anaconda, Inc. Speaker: Olivier Grisel, INRIA | |||
Ray: A Distributed Execution Framework for AI [More Info] Speaker: Robert Nishihara, University of California, Berkeley Speaker: Philipp Moritz, University of California, Berkeley Speaker: Ion Stoica, University of California, Berkeley | |||
Scalable Feature Extraction with Aerial and Satellite Imagery [More Info] Speaker: Virginia Ng, Mapbox Speaker: Daniel Hofmann, Mapbox | |||
Beyond Scraping: How to Use Machine Learning When You're not Sure Where to Start [More Info] Speaker: Julie Lavoie | |||
Materials Science | |||
Design and Implementation of pyPRISM: A Polymer Liquid-State Theory Framework [More Info] Speaker: Tyler Martin, NIST Author: Thomas Gartner, University of Delaware Author: Ronald Jones, NIST Author: Chad Snyder, NIST Author: Arthi Jayaraman, University of Delaware | |||
signac: A Python Framework for Data and Workflow Management [More Info] Speaker: Vyas Ramasubramani, University of Michigan Author: Carl Adorf, University of Michigan Author: Paul M. Dodd, University of Michigan Author: Bradley Dice, University of Michigan Author: Sharon C. Glotzer, University of Michigan | |||
Exploring Molecular Space with Deep Generative Models and Python [More Info] Speaker: Benjamin Sanchez Lengeling, Harvard University | |||
Evolutionary Niching in the GAtor Genetic Algorithm for Molecular Crystal Structure Prediction [More Info] Speaker: Timothy Rose, Carnegie Mellon University Author: Farren Curtis, Carnegie Mellon University Author: Xiayue Li, Google Author: Noa Marom, Carnegie Mellon University | |||
Political and Social Science | |||
Spatio-temporal Analysis of Socioeconomic Neighborhoods [More Info] Speaker: Serge Rey, University of California, Riverside Speaker: Elijah Knaap, University of California Speaker: Su Han, University of California Speaker: Levi Wolf, University of Bristol | |||
Open Source Tools for 'Heterogeneous Agent' Modeling [More Info] Speaker: Christopher Carroll, Johns Hopkins University Speaker: Matthew White, University of Delaware | |||
Reproducibility and Software Sustainability | |||
Jupyter Notebook Driven Development with PYNT (PYthon iNTeractive) [More Info] Speaker: Edward Banner, mosss.com | |||
Sneaking Data into Containers with the Whole Tale [More Info] Speaker: Matthew Turk, University of Illinois Speaker: Kacper Kowalik, University of Illinois at Urbana-Champaign | |||
Reproducible Environments for Reproducible Results [More Info] Speaker: Bihan Zhang, Red Hat Speaker: Austin Macdonald, Red Hat | |||
Binder 2.0: The Next Generation of Reproducible Scientific Environments with repo2docker and BinderHub [More Info] Speaker: M Pacer, University of California, Berkeley Speaker: Chris Holdgraf, University of California, Berkeley Speaker: Min Ragan-Kelley, IPython/Jupyter | |||
SciPy Tools | |||
SciPy Tools Plenary Session [More Info] | |||
SciPy Tools Plenary Session [More Info] | |||
SciPy Tools Plenary Session [More Info] |
Posters | |||
A Python Environment for Automated Integration of Hydrologic Data into Watershed Models [More Info] Speaker: David Lampert, Oklahoma State University Speaker: Mitchell Sawtelle, Oklahoma State University | |||
A Quantum Toolchain [More Info] Speaker: Michael Goerz, Stanford University and Army Research Lab | |||
Addressing Barriers to In-situ Use of Jupyter Notebooks in HPC Simulations [More Info] Speaker: Thomas Stitt, Lawrence Livermore National Laboratory Speaker: Thomas Mendoza, Lawrence Livermore National Laboratory Speaker: Cyrus Harrison, Lawrence Livermore National Laboratory Speaker: Todd Gamblin, Lawrence Livermore National Laboratory | |||
Building Communities Around Open-Source Geoscience Projects [More Info] Speaker: John Leeman, UCAR/Unidata Speaker: Ryan May, UCAR/Unidata | |||
Chebyshev Expansions: Background and Computing in the C++/Python Library ChebTools [More Info] Speaker: Lucas Bouck, George Mason University Speaker: Ian Bell, NIST | |||
Data Science in US & Canadian High Education [More Info] Speaker: Laura Noren, CIMS - Center for Data Science Speaker: Anthony Suen, University of California - Berkeley, Division of Data Sciences Speaker: Alan Liang, University of California - Berkeley, Division of Data Sciences | |||
Developing a Surrogate Model for SWAT with Remotely Sensed Soil Moisture Using Python [More Info] Speaker: Katherine Breen, Baylor University, Department of Geosciences Speaker: Scott James, Baylor University, Departments of Geosciences and Mechanical Engineering Speaker: Joseph White, Baylor University, Department of Biology | |||
Developing an LSTM Pipeline for Accelerometer Data [More Info] Speaker: Christian McDaniel, University of Georgia Speaker: Shannon Quinn, University of Georgia | |||
Developing Thematic Maps for State of New York Traffic Accident Data with GeoPandas and Pandas [More Info] Speaker: Mehmet Kunt, Eastern Mediterranean University | |||
Dynamic Social Network Modeling of Diffuse Subcellular Morphologies [More Info] Speaker: Andrew Durden, University of Georgia Speaker: Allyson Loy, University of Georgia Speaker: Barbara Reaves, University of Georgia Speaker: Mojtaba Fazil, University of Georgia Speaker: Abigail Courtney, University of Georgia Speaker: Frederick Quinn, University of Georgia Speaker: Chakra Chennubhotla, University of Pittsburgh Speaker: Shannon Quinn, University of Georgia | |||
Exploring the Extended Kalman Filter for GPS Positioning Using Simulated User and Satellite Track Data [More Info] Speaker: Mark Wickert, University of Colorado Speaker: Chiranth Siddappa | |||
Infrastructure for Interoperability in Computational Chemistry [More Info] Speaker: Lori Burns, Georgia Tech Speaker: Justin Turney, University of Georgia Chemistry | |||
Is the Force with Us? Quantifying Model Uncertainty in Molecular Simulations [More Info] Speaker: Chaya Stern, Weill Cornell Medicine / Memorial Sloan Kettering Cancer Center Speaker: Gregory Ross, Schrodinger Speaker: John Chodera, Memorial Sloan Kettering Cancer Center | |||
itk-jupyter-widgets: Interactive 3D and 2D Image Visualization for Jupyter [More Info] Speaker: Matthew McCormick, Kitware, Inc. Speaker: Sebastien Jourdain, Kitware, Inc. Speaker: Ken Martin, Kitware, Inc. Speaker: Alexis Girault, Kitware, Inc. Speaker: Michael Grauer, Kitware, Inc. Speaker: Jean-Christophe Fillion-Robin, Kitware, Inc. | |||
Leveraging Expert CPU Architecture Knowledge and Advanced Hardware Profiling Techniques for High-performance Python Workloads [More Info] Speaker: David Liu, Intel Author: Jackson Marusarz, Intel | |||
Making Pandas Faster with Ray and Apache Arrow [More Info] Speaker: Devin Petersohn, University of California, Berkeley Speaker: Robert Nishihara, University of California, Berkeley Speaker: Philipp Moritz, University of California, Berkeley Speaker: Simon Mo, University of California, Berkeley Speaker: Helen Che, University of California, Berkeley Speaker: Peter Veerman, University of California, Berkeley Speaker: Harikaran Subbaraj, University of California, Berkeley Speaker: Rohan Singh, University of California, Berkeley Speaker: Joseph Gonzalez, University of California, Berkeley Speaker: Ion Stoica, University of California, Berkeley Speaker: Anthony Joseph, University of California, Berkeley | |||
Managing Thirty Years of Continuous Coastal Data Collection the Pythonic Way [More Info] Speaker: Evan Turner, Texas Water Development Board | |||
Model Evaluation in the Land of Deep Learning [More Info] Speaker: Pramit Choudhary, DataScience Inc. | |||
NumFOCUS: An Approach to Sustaining Major Scientific Software Projects [More Info] Speaker: Andy Terrel, NumFOCUS Speaker: Leah Silen, NumFOCUS | |||
Organic Molecules in Space: Insights from the NASA Ames Molecular Database in the era of the James Webb Space Telescope [More Info] Speaker: Matthew Shannon, NASA/Universities Space Research Association Speaker: Christiaan Boersma, NASA/San José State University Research Foundation | |||
Oxidizing Python: Writing Extensions in Rust [More Info] Speaker: Luiz Irber, Department of Population Health and Reproduction, University of California, Davis | |||
PlasmaPy: Beginning a Community Python Package for Plasma Physics [More Info] Speaker: Nicholas Murphy, Harvard University Speaker: Dominik Stańczak, PlasmaPy Speaker: Pawel Kozlowski, West Virginia University Speaker: Andrew Leonard, Aperio Software Speaker: Tulasi Parashar, University of Delaware | |||
Predicting Bicycle Ridership Volumes in Large Cities Using Big Crowdsourced Data from Strava using Linear Models from scikit learn [More Info] Speaker: Avipsa Roy, School of Geographical Sciences and Urban Planning, Arizona State University Speaker: Trisalyn Nelson, School of Geographical Sciences and Urban Planning, Arizona State University | |||
PyKED: A Python-based Tool Supporting Data Analysis and Experimental Reproducibility in Combustion [More Info] Speaker: Kyle Niemeyer, Oregon State University Speaker: Bryan Weber, University of Connecticut | |||
Python in the Community Satellite Processing Package [More Info] Speaker: Geoffrey Cureton, Cooperative Institute for Meteorological Satellite Studies, University of Wisconsin - Madison | |||
Python Tools for Atomistic Polymer Simulation Workflows at nanoHUB.org [More Info] Speaker: Ben Haley, Purdue University Speaker: Chunyu Li, Purdue University Speaker: Lorena Alzate-Vargas, Purdue University Speaker: Martin Hunt, Purdue University Speaker: Alejandro Strachan, Purdue University | |||
Real-Time Digital Signal Processing Using pyaudio_helper and the ipywidgets [More Info] Speaker: Mark Wickert, University of Colorado | |||
Recurrent Neural Networks for Efficient Modeling of Nonlinear Random Vibration Analysis [More Info] Speaker: David Najera, ATA Engineering Speaker: Adam Brink, Sandia National Labs | |||
Scarplet: Cloud-based Template Matching for Detecting Earthquake-Related Landforms in Large Topographic Datasets [More Info] Speaker: Robert Sare, Stanford University Speaker: George Hilley, Stanford University | |||
SIFT: An OpenGL-powered Python GUI for Training NWS Forecasters [More Info] Speaker: David Hoese, University of Wisconsin - Madison, Space Science and Engineering Center Speaker: Ray Garcia, University of Wisconsin - Madison, Space Science and Engineering Center Speaker: Jordan Gerth, University of Wisconsin - Madison, Space Science and Engineering Center Speaker: Scott Lindstrom, University of Wisconsin - Madison, Space Science and Engineering Center | |||
Text and Data Mining Scientific Articles with Allofplos [More Info] Speaker: Elizabeth Seiver, PLOS Speaker: M Pacer, University of California, Berkeley Speaker: Sebastian Bassi, Globant | |||
The Application of Modern Optimization Packages to Multisensor Meteorological Data Assimilation [More Info] Speaker: Robert Jackson, Argonne National Laboratory Speaker: Scott Collis, Argonne National Laboratory Speaker: Timothy Lang, NASA MSFC Speaker: Todd Munson, Argonne National Laboratory Speaker: Corey Potvin, Cooperative Institute for Mesoscale Meteorological Studies/National Severe Storms Laboratory | |||
The CodeEazee Tool for Teaching Python to non-CS Majors: Experiences from a Nigerian College [More Info] Speaker: Memunat Ibrahim, Federal University Lokoja Speaker: Francisca Oladipo, Federal University Lokoja | |||
Understanding Machine Learning by Looking at Simple Visualizations [More Info] Speaker: Oliver Zeigermann | |||
WrightSim: Using PyCUDA to Simulate Multidimensional Spectra [More Info] Speaker: Blaise Thompson, University of Wisconsin-Madison Speaker: Kyle Sunden, University of Wisconsin-Madison Speaker: John Wright, University of Wisconsin-Madison |